PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000071.1_g00072.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 220aa    MW: 24129.1 Da    PI: 5.8135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000071.1_g00072.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1670120255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr++  +g+++AeIrdp  +   +r +lg++ t eeAa a+++a+ +l+g
  Itr_sc000071.1_g00072.1  70 RYRGVRRRQ-WGKFAAEIRDPARG--GARRWLGTYETSEEAALAYDRAAFELRG 120
                              8*****887.**********8443..3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-2869128No hitNo description
PROSITE profilePS5103224.23670128IPR001471AP2/ERF domain
SMARTSM003803.2E-3270134IPR001471AP2/ERF domain
PfamPF008471.1E-1170120IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2270128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2870128IPR001471AP2/ERF domain
PRINTSPR003672.4E-127182IPR001471AP2/ERF domain
PRINTSPR003672.4E-12110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MELTAMASLE YDLAIFDSIN HLLHQQDLPE FMFSDNGFEG TGNEASSSLG DSGEAEATTE  60
VGVAPPEWKR YRGVRRRQWG KFAAEIRDPA RGGARRWLGT YETSEEAALA YDRAAFELRG  120
TKALLNFPGL AAAGIPEPVR VKRQKPKRRA ARPPSPSFEH GGGASKKRKV NVLNSLAAAT  180
AKLGSQTMLE MFQKDNSSVS IFDGFDAQVD VEECLCFPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-2769128463ATERF1
2gcc_A1e-2769128463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146168KRRAARPPSPSFEHGGGASKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094418.11e-39PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ404792e-35ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLK4AYX23e-39K4AYX2_SOLLC; Uncharacterized protein
TrEMBLM1DMP72e-39M1DMP7_SOLTU; Uncharacterized protein
STRINGSolyc01g090310.2.17e-39(Solanum lycopersicum)
STRINGPGSC0003DMT4000914746e-39(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-30ethylene-responsive element binding factor 13